| Basic Information | |
|---|---|
| Taxon OID | 3300029826 Open in IMG/M |
| Scaffold ID | Ga0134619_1015853 Open in IMG/M |
| Source Dataset Name | Marine sediment microbial communities from Jimmy Bay, New Orleans, USA to study impact of Deep Water Horizon explosion - N0247 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Battelle Memorial Institute |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1749 |
| Total Scaffold Genes | 2 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Novel Protein Genes | 1 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 1 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment → Marine Sediment Microbial Communities From New Orleans, Usa To Study Impact Of Deep Water Horizon Explosion |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Bay Jimmy | |||||||
| Coordinates | Lat. (o) | 29.44 | Long. (o) | -89.903 | Alt. (m) | Depth (m) | .02 to .04 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F010017 | Metagenome / Metatranscriptome | 309 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0134619_10158532 | F010017 | N/A | NCMNHRKHKQAQNLKKKVYTPEGYIKDPPDAVCPHCGKKQKPCSYVNSLSRAWSRDACKKKYPQIFLVDMNLRM |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |