| Basic Information | |
|---|---|
| Taxon OID | 3300029787 Open in IMG/M |
| Scaffold ID | Ga0183757_1000002 Open in IMG/M |
| Source Dataset Name | Marine viral communities collected during Tara Oceans survey from station TARA_018 - TARA_A100000172 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | CEA Genoscope |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 185197 |
| Total Scaffold Genes | 231 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 42 (18.18%) |
| Novel Protein Genes | 8 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 8 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Mediterranean Sea: TARA_018 | |||||||
| Coordinates | Lat. (o) | 35.7528 | Long. (o) | 14.2765 | Alt. (m) | Depth (m) | 60 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004358 | Metagenome / Metatranscriptome | 442 | Y |
| F007974 | Metagenome / Metatranscriptome | 341 | Y |
| F047358 | Metagenome / Metatranscriptome | 150 | N |
| F052252 | Metagenome / Metatranscriptome | 143 | Y |
| F083374 | Metagenome / Metatranscriptome | 113 | Y |
| F084835 | Metagenome / Metatranscriptome | 112 | Y |
| F090990 | Metagenome / Metatranscriptome | 108 | Y |
| F098204 | Metagenome / Metatranscriptome | 104 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0183757_1000002157 | F052252 | N/A | MEDQFINPQQIRSPYTGETVRPVFNTYVNNGKTYEQAVMSDPVTGHIIKKGLVSIKDSKTGEVIQDYNSALSQSNTTQSRG |
| Ga0183757_1000002160 | F083374 | N/A | MSLYQKRFKKFLSEQDDENTELTDQEAMASTLEPETSPEDFDVDAPAGGEDPVSSQSRQMFEELSSWIDKMDEFGDYLNGTTDSIQTSLNSAEPDTIFDSISNAETKKIARVAMEVSSLSEILKGYLAGANDPKYKFN |
| Ga0183757_1000002164 | F098204 | N/A | MIQKDRDIIQEYGIDFVARFACLYEGVNVACSRAERIGYDTEHSTAWVKPTAFQKYVDERYLDMKHDIQLYLKGIDTDEIYPWDEIYK |
| Ga0183757_1000002226 | F007974 | N/A | MSKRAKPGVDLRAPNPTHTKRMGRSYGPLVYNEHVGHKVTQKIDKAIKNNRKDKVN |
| Ga0183757_100000236 | F047358 | N/A | MKKKYIIIGAAAAIIALLAFCGKAEAQEARQEKTWKVDVTTGYYEKRISGGLYGAQDVAYIKGSTKLGVIAGLSFVSGVEYVNSDNSQFHTSLGTYIDTPVGGIDTRLVMHSIENADTSYELEGAYDLNWFKAFDTTFTVALEDGSEVGSEYDSTIVTPAIEVSKTFTVKDAVDVTVGAEYGQSIGLDDDELEYTYGYVRFDTLANDLPVFVQVNALKNNQGVVNNISSEGTDGDFDVTITAGLAFSF |
| Ga0183757_100000248 | F084835 | N/A | MKVSLPNLKNTLQGNVCEIIFEKRRPKPGDSSQRRMLCTLDESLLNSVNGRTTLNYKPPSGPPKYDPTSKNLLPVWDIMMQGWRMVSMDNCAIVNTIPQDDFFEYFNENIYPMSADEKRNYMGT |
| Ga0183757_100000272 | F004358 | N/A | MFGLITMLLTTLGATGMGSMLKIVGGLFAGISDAKEAKHKRELIRDMQMQKADLEFQKAVFGDMDKDTSVFTRGTRRLIALIGMCNFFVISVLCTLWPGVELITFTPPENKESIKLIWGLVTFPSGADITTSITTGHIALVSIATLGAIIGFYFTPGGKR |
| Ga0183757_10000028 | F090990 | N/A | MSDQTKIFNLYESNLNQSAIGYAQQRDPAKNLKYRPGDAKPGQTYSKYNLPTTSPEKVKGAAFTPNGISDEEITIKGYGVIDSEQALGMLNRLKNDIHDLINKNVTGSVLKSKIDLYTSIIEQIS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |