| Basic Information | |
|---|---|
| Taxon OID | 3300029578 Open in IMG/M |
| Scaffold ID | Ga0245007_100289 Open in IMG/M |
| Source Dataset Name | Human fecal microbial communities from Shanghai, China - P094V1 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Beijing Genomics Institute (BGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 67803 |
| Total Scaffold Genes | 94 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 18 (19.15%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai, China |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | China: Shanghai | |||||||
| Coordinates | Lat. (o) | 31.2112312 | Long. (o) | 121.4647709 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F032312 | Metagenome / Metatranscriptome | 180 | N |
| F060985 | Metagenome / Metatranscriptome | 132 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0245007_10028975 | F060985 | GGA | MSNIDEKAKNNFTIEMRIFENYEKVKYEIIKAIDFLRHSETPMGMCKIFDNQNHGFWHSVIKPWFQPERFGITHLWFTSGFSFIGYGEYHIIRGNRWMKTPIDKIDKEDRIFGYWFPPYKKYIPHRIKVLKLALKDLERIKEEYGKD |
| Ga0245007_10028976 | F032312 | N/A | MARIKDYDEDLSAPKLLSERARDSKGRFIKKDLPPYLGSEQVLKPKNYYHFDSHGNYKGSSMNFDALVCLGFTWFKLLGVALMMLLWPIVFIYALNDGIEGYPFKKYAVPYTFILVAWFIIFLYGLVS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |