NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0183755_1014804

Scaffold Ga0183755_1014804


Overview

Basic Information
Taxon OID3300029448 Open in IMG/M
Scaffold IDGa0183755_1014804 Open in IMG/M
Source Dataset NameMarine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2827
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameMediterranean Sea: TARA_023
CoordinatesLat. (o)42.1735Long. (o)17.7252Alt. (m)Depth (m)55
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009186Metagenome322N
F012530Metagenome280N
F014969Metagenome258N

Sequences

Protein IDFamilyRBSSequence
Ga0183755_10148041F012530N/AMSTKPETLFYKQIFRELKQVFWSRIENRHGGGIPDLYGVYSGFSFWLECKTIIKQNRI
Ga0183755_10148043F009186N/AVTSHLLKYFILVYNPKLLGDFQKSSMEYNSLNDLEGSNITNIKRCYGVFHDTIETNGKTYKLQNTGNHARKDTYWKAFNCVTYNEDHLRGGVDQISSRLKNNFFTNGKGNIKTNAMNTALQLAV
Ga0183755_10148047F014969N/AMISNYPFGKKNDRPNYYYTQDVYSDGQGITGRIKKRKNKNVRIRKIKKAT
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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