NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0183755_1012149

Scaffold Ga0183755_1012149


Overview

Basic Information
Taxon OID3300029448 Open in IMG/M
Scaffold IDGa0183755_1012149 Open in IMG/M
Source Dataset NameMarine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3288
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (92.86%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameMediterranean Sea: TARA_023
CoordinatesLat. (o)42.1735Long. (o)17.7252Alt. (m)Depth (m)55
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003677Metagenome / Metatranscriptome474Y
F009561Metagenome / Metatranscriptome316N
F026154Metagenome / Metatranscriptome199Y
F027854Metagenome / Metatranscriptome193N
F090327Metagenome / Metatranscriptome108N

Sequences

Protein IDFamilyRBSSequence
Ga0183755_10121491F090327N/APQAIFDEWMKTIDPFEDDSPYPLRISQITRAWEKIDNVGKHNYLTRQTNPRYKTMLEQMKGN
Ga0183755_101214912F027854AGGMTDKEAMKLHELIDELRAKLQKSLQEILQLRKDLDLEREEHQLTQLRYDTVKNAINKEVDRLNQRRPDVEIPADEKGIK
Ga0183755_101214914F009561GGAGGMTELKDEHLEIISNNKGKKHEIDKMVEQLSDARESVAVLGNAIECGFLHDKHSLILQDWIVSYEQLIEQLDTHLTEMRTHG
Ga0183755_10121492F026154AGGAMNGIINIVRFVAYSVGGLAVRKAWNWLIEDVDPIPGSKEFDDEYYQTKTKYIRLTKLKEEHEAYRKSRRGNS
Ga0183755_10121497F003677AGGMVDEALYFFEKDVGKKVYEIEYEATYVTKWQVLAEDENEAFNTWLAENKQDLVTEDGKDCVCSYVKDYTQLGKTQVIAEIKYNKEDNEVYADES
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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