NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0183755_1000273

Scaffold Ga0183755_1000273


Overview

Basic Information
Taxon OID3300029448 Open in IMG/M
Scaffold IDGa0183755_1000273 Open in IMG/M
Source Dataset NameMarine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)30821
Total Scaffold Genes43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (44.19%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameMediterranean Sea: TARA_023
CoordinatesLat. (o)42.1735Long. (o)17.7252Alt. (m)Depth (m)55
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002093Metagenome / Metatranscriptome594Y
F005720Metagenome / Metatranscriptome392Y
F059878Metagenome133N

Sequences

Protein IDFamilyRBSSequence
Ga0183755_100027317F005720AGGAGMPATSNATANMCRRQSFTGKGLTFIEMLFDDEMLTTATTPDTKDSVFNEMSKLVGTFGTILAQSYTLGVKATEKDAAIATSIVEDELCDVYSFIVEGTPGQFNAADSAGDINLDPNQADASDPGVIADAEADIEVEILARITENDSAGGVHVDVRYLPADGVTAAGEEVVYGMNSARVNA
Ga0183755_100027319F002093AGGAGGMAYDGTISAGGPGNFQTPNLAHEGEGVRVDFITVDYISAMNGEVTHSTASANTAGLKLSIEAIQNQGVNVLGMGALGNSNTEQTYMVRADALDTISSTTTVAAIQAAIRGLNALTPDKVTATISSATAGDRDLSDTQVA
Ga0183755_100027338F059878N/AMKQGVEMYKERVRKKDVNPFAIKKGFYITELNMGHLPGDGYELISTSELAGPFKTLDRARAVFKKIVCENKWRNHWDFDICGPAHRPNGYETPWYGFKERA
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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