| Basic Information | |
|---|---|
| Taxon OID | 3300029442 Open in IMG/M |
| Scaffold ID | Ga0239579_1005402 Open in IMG/M |
| Source Dataset Name | Freshwater lake microbial communities from Alinen Mustajarvi, Finland - AM13 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Uppsala University |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3275 |
| Total Scaffold Genes | 10 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (80.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Alinen Mustajarvi, Finland |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Finland: Alinen Mustajarvi in Hameenlinna | |||||||
| Coordinates | Lat. (o) | 61.208142 | Long. (o) | 25.113609 | Alt. (m) | Depth (m) | 6.1 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F007166 | Metagenome / Metatranscriptome | 356 | Y |
| F007848 | Metagenome | 343 | Y |
| F031765 | Metagenome | 181 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0239579_10054021 | F031765 | GGA | MKEYDPNDAIDYIYTNAPAYAKAKGELAELEAFKSSLKAIKMSESSEQSLG |
| Ga0239579_10054025 | F007848 | GGA | MKDAIGVAILGIILGCMFGYGSAHAQTYQMTNPQGYSQGTVQIQGNTAQFVNPMGYTTQTAIIYPNQIVFTSPSGYTTGVVGTPQYTTPSSPSTPTSPRTLQ |
| Ga0239579_10054028 | F007166 | GGA | MSQLNQLMIEMEERLEIALDNMEFGTELAQDDIDVIRAACGKPRNSHVNPLLRDVINDFGAVFGLDSFPTIRGAK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |