NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0238435_101219

Scaffold Ga0238435_101219


Overview

Basic Information
Taxon OID3300029349 Open in IMG/M
Scaffold IDGa0238435_101219 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Iron Gate Dam, Klamath Basin, California, USA - IR103
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOregon State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4976
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (78.57%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Klamath Basin, Usa

Source Dataset Sampling Location
Location NameUSA: Iron Gate Dam, Klamath Basin, California
CoordinatesLat. (o)41.93Long. (o)-122.44Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001176Metagenome / Metatranscriptome756Y
F001280Metagenome / Metatranscriptome732Y
F006846Metagenome / Metatranscriptome363Y

Sequences

Protein IDFamilyRBSSequence
Ga0238435_10121912F001176N/AMSENGTGMSTPPNNEPSGAVNSQDAGRKKPSQGKFRSGFPTQKTPMKVDTNKHGIRRETNTGPKKTGKPKKV
Ga0238435_10121913F001280GGCGGMCFECGCESVGSTTGVTPVTVTDVSRDGEAGLTLNMTSTPEQTRQFINE
Ga0238435_1012192F006846N/AVRKKCGEERENMLFNFVEKYLMRPRRLREAIQAVVRDNDEILRSLKEYEDQGPNNLTWSEGDLWYGWTHSPDKKRYYFDDIGYESIIKLWEKQWEREAEDDL
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