NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0183683_1000957

Scaffold Ga0183683_1000957


Overview

Basic Information
Taxon OID3300029309 Open in IMG/M
Scaffold IDGa0183683_1000957 Open in IMG/M
Source Dataset NameMarine viral communities collected during Tara Oceans survey from station TARA_100 - TARA_R100001440
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13031
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (22.22%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameSouth Pacific Ocean: TARA_100
CoordinatesLat. (o)-13.0023Long. (o)-95.9759Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010393Metagenome / Metatranscriptome304N
F017728Metagenome / Metatranscriptome239Y
F028945Metagenome / Metatranscriptome190Y

Sequences

Protein IDFamilyRBSSequence
Ga0183683_100095713F017728N/AMNPIDDINVGDIIEMTRTGKEFSVESISPSGIVLKECARIVTFSHSALNDRLERNAAIHKPI
Ga0183683_10009576F010393N/AMGFNTFQRIKGSGHGRVGGGAFIGFDEKDINKEFERAFKELEKLHDDVTTAQIRRIARASLKPMLKAYRDGITDFPSSSASEKGRKKPRNKFVVYRNGSVFAEITKGQLKKSMGIITTRVNKGDTFASLQVGPRVKRSFKDPEKGGWFAHFIEYGFLNNGRYNGVNKGFASKARAQNMSGVGNEFKRRMRSFLNKKVKAAKQ
Ga0183683_10009579F028945N/AMKVRFLKSIVGNGFHYHRDMVVDIHSDEIAMDYLNAGFCESVAEPPKKRAKKAVKKSSKETR
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