| Basic Information | |
|---|---|
| Taxon OID | 3300029309 Open in IMG/M |
| Scaffold ID | Ga0183683_1000291 Open in IMG/M |
| Source Dataset Name | Marine viral communities collected during Tara Oceans survey from station TARA_100 - TARA_R100001440 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | CEA Genoscope |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 29687 |
| Total Scaffold Genes | 46 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 18 (39.13%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | South Pacific Ocean: TARA_100 | |||||||
| Coordinates | Lat. (o) | -13.0023 | Long. (o) | -95.9759 | Alt. (m) | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001668 | Metagenome / Metatranscriptome | 654 | Y |
| F009330 | Metagenome / Metatranscriptome | 319 | N |
| F014253 | Metagenome / Metatranscriptome | 264 | N |
| F036970 | Metagenome / Metatranscriptome | 169 | Y |
| F042877 | Metagenome / Metatranscriptome | 157 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0183683_100029114 | F036970 | N/A | MTKFRQWFADVNRAIVAQMAVQKVTQKDLADHLGVHAATMNRKLQDPGLFTAGEFGAVCERLNIDLNNPKSYGAGAS |
| Ga0183683_100029119 | F042877 | GGA | MTQGILAAIAVLSFAQLGVEYFQEDQVRIFGLVIFLLACLGVVA |
| Ga0183683_100029121 | F009330 | N/A | VTLNRYLERNYTDLLQAAERIAGKDGPDLLHEVILQLYQTKAETLDGLLERGQMKYWALRVMVNNYNSKTSRYHYKWRKDIERRRKFSRQIRDWWDGDGVAAHRDELLTHIETQLADLPWFDAEVFAIYFEEGHTLDSFAEATGISRHTLYTTIRRVRKRIQGTGRQNREAHQSNGDR |
| Ga0183683_10002913 | F001668 | N/A | MATVYLPVKPIEGMDSAERAEALDAEVWRLRRPLSLQSPQDVTKYYYPRITHPNTGQVAIVGNTTEEVRISTDVDLTNMLALLPEVPQEEKDMLVQFVNANRGGTIPFGQLIPSTSEQLTEEEAKAIGWLPDPIDPS |
| Ga0183683_100029143 | F014253 | N/A | MIVVVKNNPGSVQNTVYLTPKEKRGAANVALYGATISALGMELKSLTTDKTAMVNARVLTVTDRFTTFVFDAQVPTADTSVDLSGPSWPEGYFQYRIVERSSSSDVQAISSTDVILEEGLGYLVRGLQTGILLTESGDNLTTEEPGMILKEDATATTEAYQETTYASHTDDSSTFTFYE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |