NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0135212_1000110

Scaffold Ga0135212_1000110


Overview

Basic Information
Taxon OID3300029306 Open in IMG/M
Scaffold IDGa0135212_1000110 Open in IMG/M
Source Dataset NameMarine harbor viral communities from the Indian Ocean - SCH3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMichigan State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2806
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Harbor → Unclassified → Marine Harbor → Marine Harbor Viral Communities From The Pacific And Indian Ocean

Source Dataset Sampling Location
Location NameIndian Ocean
CoordinatesLat. (o)1.26600833Long. (o)103.8333333Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001215Metagenome746Y
F093531Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0135212_10001103F001215N/AMVDRPFFRGAKINSGTTVIPDASNPDFADLVQLVRVGDIPSEDGALVEDIFVVSSEGYPDDGGVRTAAFGVYVYAPNQAAPSTSTSLLVGKFQIGLSGSTEGVIQRVELPATVAPTPQVGDTSLVYPIERGKSEAMYLEKGYILCIGYLGDGPAAVSGGLSPSGVSIMAQGGFY
Ga0135212_10001104F093531N/AMWTRWRRGYELYMYANQAYVGLNYSFRYWTTGTVGRGAALPGVCYMYPSMSQDMAMRMVAVRPRDSFNFLDFGYAIKSVTHVSGVVYAIELSSNFGPPISFFTGEVLSDRFNAAGEEKTSYNNYAVVGVGNGTTPIKPSFAPIYNSIFISLDTDNSWSVVNNETLKTPAELPTPGEYFTTEMRFSCNCPDYLAREDFNLYKYSLKRRYPYTSPQDLKPGLYDVGQDYDSSRTAGTRDYPGYTRDFGFLYTKKILNLPSYTDGSKVYSDPNLIYF
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