NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0265297_10232576

Scaffold Ga0265297_10232576


Overview

Basic Information
Taxon OID3300029288 Open in IMG/M
Scaffold IDGa0265297_10232576 Open in IMG/M
Source Dataset NameLeachate microbial communities from a municipal landfill in Southern Ontario, Canada - Leachate well 137-91
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1323
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin012(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Solid Waste → Landfill → Unclassified → Unclassified → Landfill Leachate → Leachate And Groundwater Microbial Communities From A Municipal Landfill And Adjacent Aquifer In Southern Ontario, Canada

Source Dataset Sampling Location
Location NameCanada: Waterloo, Ontario
CoordinatesLat. (o)43.442Long. (o)-80.577Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039036Metagenome164Y
F043917Metagenome / Metatranscriptome155Y

Sequences

Protein IDFamilyRBSSequence
Ga0265297_102325761F039036N/AMTTFQIIIRKIAVYFSKPIWSFIRNCVFWLFHLNDIKEVRSIKADIKYLSIESVMESFFWKEDKCGDWTPWVMTIICQRFKDDCDGAAALAKFWFHEHSIEAEILNLYSEKEGHAVCVTMDRRTMVTNERVVNLNPTCWEKEVLEYFNGKYEVII
Ga0265297_102325764F043917GGAGGMNPYDWWLKLYEIWMDLVFEVNALRNCHNQNKDELT

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