| Basic Information | |
|---|---|
| Taxon OID | 3300029288 Open in IMG/M |
| Scaffold ID | Ga0265297_10032950 Open in IMG/M |
| Source Dataset Name | Leachate microbial communities from a municipal landfill in Southern Ontario, Canada - Leachate well 137-91 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4959 |
| Total Scaffold Genes | 12 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (58.33%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Engineered → Solid Waste → Landfill → Unclassified → Unclassified → Landfill Leachate → Leachate And Groundwater Microbial Communities From A Municipal Landfill And Adjacent Aquifer In Southern Ontario, Canada |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Canada: Waterloo, Ontario | |||||||
| Coordinates | Lat. (o) | 43.442 | Long. (o) | -80.577 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F039036 | Metagenome | 164 | Y |
| F043917 | Metagenome / Metatranscriptome | 155 | Y |
| F068794 | Metagenome / Metatranscriptome | 124 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0265297_1003295010 | F068794 | AGG | MDKKEKGFIFNHKTITIRGSFINMLFTMVLMALFIVAAFRKEVADNLKMIAELIIAIYAISYGVWQGKKFLEGKKEKKEGADEPKE |
| Ga0265297_100329504 | F039036 | N/A | MTTLQIIIRKIAVHFSKPIWSFIRNCVFWLGHLNKVGQAKLQAKAFSKMRTIHELMQEFQWAEDRVGDWTPWVITLAYRGLKDDCDGAAALAKWWFKQHGIKSDIFNLYSAAEGHTVCVTKDRETMVTNERVVNLNPACWEKEMLDYFGNKYTEII |
| Ga0265297_100329507 | F043917 | AGGAGG | MNPYDWWLKMYEIWMELVFEVNALRNCHNQNKDELTKIKELLIREGIWK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |