NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0265297_10029111

Scaffold Ga0265297_10029111


Overview

Basic Information
Taxon OID3300029288 Open in IMG/M
Scaffold IDGa0265297_10029111 Open in IMG/M
Source Dataset NameLeachate microbial communities from a municipal landfill in Southern Ontario, Canada - Leachate well 137-91
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5415
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica → Candidatus Velamenicoccus → Candidatus Velamenicoccus archaeovorus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Solid Waste → Landfill → Unclassified → Unclassified → Landfill Leachate → Leachate And Groundwater Microbial Communities From A Municipal Landfill And Adjacent Aquifer In Southern Ontario, Canada

Source Dataset Sampling Location
Location NameCanada: Waterloo, Ontario
CoordinatesLat. (o)43.442Long. (o)-80.577Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F069433Metagenome / Metatranscriptome124N
F072819Metagenome121N

Sequences

Protein IDFamilyRBSSequence
Ga0265297_100291114F072819N/AVIEMFQDQTKAQEVSFKIARIESENAVSELVNWCRNNLDELTVQCFTHKRFMSVQAFIDALCEVYRDLGVEGDNGNISAFLLFLAGKHRDKIYASHVVELNDTHREIFKDKLGLDIEEIEPGLSKLDWRADAGI
Ga0265297_100291115F069433AGGAGMAHKMPPKQCSSNTPAWTDPVLTDLSTKVRKVHIDELRSFLNAEFVRRGLAQGSFTDPTITALVTEIRKVHVDQLRTELAACKSGRGESGYCPQDGSGCMDFTDPTITALSTEVRGIHFRQMMQKVQALMTGCICETEQCQYCADCGYHYTTCSHAGVACDDHKYSECQYSLNHYWICASINLPSATAHPYKSASGNPLSTVAWDGYVPWDWCVYTPPGSNWGTCEYSGGHNHSAWNCKCNPYSW
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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