NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0265297_10004880

Scaffold Ga0265297_10004880


Overview

Basic Information
Taxon OID3300029288 Open in IMG/M
Scaffold IDGa0265297_10004880 Open in IMG/M
Source Dataset NameLeachate microbial communities from a municipal landfill in Southern Ontario, Canada - Leachate well 137-91
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21256
Total Scaffold Genes42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)40 (95.24%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Solid Waste → Landfill → Unclassified → Unclassified → Landfill Leachate → Leachate And Groundwater Microbial Communities From A Municipal Landfill And Adjacent Aquifer In Southern Ontario, Canada

Source Dataset Sampling Location
Location NameCanada: Waterloo, Ontario
CoordinatesLat. (o)43.442Long. (o)-80.577Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033445Metagenome / Metatranscriptome177N
F057400Metagenome / Metatranscriptome136Y
F083694Metagenome112Y
F083899Metagenome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0265297_1000488010F083694GAGGMEVSPVEKLKNRQLAKLLTHLEQTGQLTVELEKTLKRSFRYAFEDVETLIQRLGLDKEDKNDNKN
Ga0265297_1000488020F057400AGGAMSRFVTWSAIIVVTIALVFCGLYWSQAVKVRENITSQSDEEYILMILKQKGADDCVLRLISEGVWSCTEFKTGKIFMVRR
Ga0265297_1000488025F083899GGGGGMTYYQRNRARILELARKYREANRAEINRKQRERYATNADYRQYQADYRDEYRKFYGR
Ga0265297_1000488042F033445N/ASEPDASKMVVELERGRVCEQQVIQYEVSVKELSIQIESLKNQVDTMSKKFDETMKQLDTERKIADEKDKARLEEIKTAGKPQWTMLFGGFGAGALLVGALVLLL
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