| Basic Information | |
|---|---|
| Taxon OID | 3300029288 Open in IMG/M |
| Scaffold ID | Ga0265297_10002554 Open in IMG/M |
| Source Dataset Name | Leachate microbial communities from a municipal landfill in Southern Ontario, Canada - Leachate well 137-91 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 36493 |
| Total Scaffold Genes | 51 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 38 (74.51%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Engineered → Solid Waste → Landfill → Unclassified → Unclassified → Landfill Leachate → Leachate And Groundwater Microbial Communities From A Municipal Landfill And Adjacent Aquifer In Southern Ontario, Canada |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Canada: Waterloo, Ontario | |||||||
| Coordinates | Lat. (o) | 43.442 | Long. (o) | -80.577 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F092957 | Metagenome / Metatranscriptome | 107 | Y |
| F096508 | Metagenome / Metatranscriptome | 104 | N |
| F096520 | Metagenome / Metatranscriptome | 104 | Y |
| F102391 | Metagenome / Metatranscriptome | 101 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0265297_1000255422 | F092957 | AGGA | MTLRGLASMAARRYADTTCDVIYNTLTPEDDGSSSVTTVTLTLKASIKPLQPVDIKRLREGGIEVQEGVSILISEALEERPEQIEADGKKWRVLSWSFIPAYENESGNPIGTVVAACDEIRVNPAATE |
| Ga0265297_1000255426 | F096520 | AGGAG | MKSIYIILMMAVSFFRELFCLPAARAANATQESLTVIIGRCVATFTAKLSGQSLSFGGDTFYNEEDLLGDITLDTERGKRHMAADGSRGVLILSIPRAGTREVKFLLGDNLDLLKHWGQAKIQTLFDFDFYYAYNTQSNEGARIHRHKNCYFTKMPLPGVGRDRGYVTAEISFEDVAEIDPLTDKEV |
| Ga0265297_1000255433 | F102391 | AGGCGG | MAFMLDSDGNIVVNASTGLAEQVTDLQSLEQDAMSECRCEQGGNFTDSTYGRNPLVWKLSQSSADRIADVKRIVSKYYNPYSITYENGIITVN |
| Ga0265297_1000255445 | F096508 | GGA | MKKTRVKPAELLKLLDKHDLQKYDICKICNVSAATAERYIKYGIPDAQYRLMQLSLGDL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |