| Basic Information | |
|---|---|
| Taxon OID | 3300029202 Open in IMG/M |
| Scaffold ID | Ga0167843_103961 Open in IMG/M |
| Source Dataset Name | Polluted lake sediment microbial communities from Telengana, India - LAKES1 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | University of Gothenburg |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3206 |
| Total Scaffold Genes | 6 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (100.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Sediment → Unclassified → Unclassified → Polluted Lake Sediment → Aquatic Microbial Community From Freshwater And Polluted Lake From Sweden And India |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | India: Telengana | |||||||
| Coordinates | Lat. (o) | 17.5741667 | Long. (o) | 78.3563333 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F021528 | Metagenome / Metatranscriptome | 218 | N |
| F051104 | Metagenome / Metatranscriptome | 144 | Y |
| F069750 | Metagenome / Metatranscriptome | 123 | N |
| F078674 | Metagenome / Metatranscriptome | 116 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0167843_1039613 | F051104 | AGGAG | LFELRIAEAIEEEAVLSQDLIHEGFSHAFKAGELLQEVKSMLHSKEDLEQWLEQNCSKIEREVAFSCLRLFNGETVKVEATHKREENHKRERG |
| Ga0167843_1039614 | F021528 | AGGAG | MIDTLKLMLNEYEITDDSEIRVQPASYELGTGSKVEYPLFQTPSHGAHYGSKAYLNTDNWNLTLKPLPAGNRATGAFLQLSVPKNYYGSNFYSVGEQGTQAVLNKVEGELKERGVHTSLIEADMSRVDTFKNIEPEEPFSSYYSLFSLLKARKAIQRGYGTTFLLSNSQQEFCVYDKLEEMRERNMETGGLPPTMRFEHRLLNKQKVQNVYGFGKVAELFKGGYEVVKEKQVESWESSLFNFTAEELVLIGSKQLEQEMKRFKEKSPSGWFSKFLKAYGAYYLASFAGKEAVIEALKNAEAERTMIWRAVQKFEEAERELMVLKQEEGSKKTLGSLYEELRRKVCLN |
| Ga0167843_1039615 | F078674 | AGGAG | METVKKAVENRKAPFEVEGKAGGRVISLRVTEKMEQLLEEQAQEWNMSISDTLRGILNFYFLPPLLYEAWEKKVQALIDLDTEQKGENRADMSAPTHAQRIEPVFCDSEEAEEYANFIHELWDKNLRYWEILREEAVTANRIAVKQLTETAEALKRCKYALPERAEVEP |
| Ga0167843_1039616 | F069750 | AGGAG | MESMEIYEKKREGSLIIGEFPLQENSFFVEGEKFLIKERKSQKGKKTQYYLIRLQPFQYVSSLFPTGEEESFTFDYEQKLYRLERKEHSVTLKFL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |