| Basic Information | |
|---|---|
| Taxon OID | 3300028907 Open in IMG/M |
| Scaffold ID | Ga0302252_1000521 Open in IMG/M |
| Source Dataset Name | Enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAG_RA_Leu |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 32574 |
| Total Scaffold Genes | 51 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 43 (84.31%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Activated Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 44.11 | Long. (o) | -88.23 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F067770 | Metagenome / Metatranscriptome | 125 | N |
| F077341 | Metagenome / Metatranscriptome | 117 | N |
| F078767 | Metagenome / Metatranscriptome | 116 | N |
| F099361 | Metagenome / Metatranscriptome | 103 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0302252_100052118 | F099361 | GAGG | MNIKNTDSISILIANSGNQKKYYPVSELKEDILADVEADAAFQDIIIQGILGNVAAPVLATESTITEEDVDPAIAIDVTKNTFIDTDSESADNWFIDFGATDLILNTITKVSDTEIEIATTGTAKVGTIRILALKDCFDAPIVDSTVLEIEVQESGE |
| Ga0302252_100052123 | F067770 | GAG | MIEFKYNSPIFKLGKISRSEWRELGMSARSEIVKRTRNGVDINHQPFHEYSAATQEYKSGIMQTRGLGSSVVTLQDTGQMHRSLSIEIQANAAILYYADQNRARVALLHQTGGYHLPKREHFGFNKTDGNKYLERIAKLQTEKNKKANK |
| Ga0302252_100052124 | F078767 | AGAAGG | MTNQITDITDEILIALQKAGCKTVGILPEVLMFSGNNNPFGFILLNSETTENDNGGILTQLLDISIFIITQSGVNKMKEHCNVLYAAIGEILKSSGLNSKTALVNLEAINWHADMPFVTQLVGDLDIISSINYNIKYMNAR |
| Ga0302252_100052130 | F077341 | GGAG | MAEMLWGFGGVKFVYGTTEMELPHCYGKLGFQELKNTWRTKSGNLKVQHKGFIPIITITMWNLGIDGINASNMSSLIQMLNAAKTDGIMIYPRYEYSNDLGYLCILSSDINPEDFSQNISAGQTLELSFIGKQKIDNMPTYTTLEGFYYMVDYWDNYLIDHNGNNLILKG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |