NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308309_10000184

Scaffold Ga0308309_10000184


Overview

Basic Information
Taxon OID3300028906 Open in IMG/M
Scaffold IDGa0308309_10000184 Open in IMG/M
Source Dataset NameWarmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)49323
Total Scaffold Genes44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)32 (72.73%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From The Hubbard Brook Experimental Forest, New Hampshire, Under Manipulated Climate Change Conditions.

Source Dataset Sampling Location
Location NameUSA: New Hampshire, Hubbard Brook experimental Forest
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000249Metagenome / Metatranscriptome1459Y
F000426Metagenome / Metatranscriptome1154Y
F001709Metagenome / Metatranscriptome648Y

Sequences

Protein IDFamilyRBSSequence
Ga0308309_1000018422F000426AGGGGGMKDIHEVLRQKQTKYAALGKQIEMLQQAAEKLREVAPLLAENDDEDNAVLMEGDEASPLSDTMAAKAGAATSGATASKGARPTAPRWP
Ga0308309_1000018440F000249GGAGGMKTLAWILVFPVLISALGRAQSTPPASSSQEAGAEQRMFFPRDMFWGWAQFDLAPPHNEIDPNLCAGNAGQYGGANAPCSMFARYMLSGTLEVRPFGRGQLRRFMVFGAPSFLFGKTIPQTLYTWSPDAIGIEHSWGAGIFIAKGFEFRVTQHFLFDRLGARDTNLGAADLGNNGPWGRYMTVGVRKSFGTRRW
Ga0308309_1000018441F001709GGAMPQEVSVSYQAVKSKVYRLIDALVVGEKTEVEVQESIRRWWDLIHPADRPIAQKYLLLVLERSSLALDAIEEGLMDATRHEATRPSESAKALKLVGRVVKQTTLSPTMPMVR
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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