NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307308_10129316

Scaffold Ga0307308_10129316


Overview

Basic Information
Taxon OID3300028884 Open in IMG/M
Scaffold IDGa0307308_10129316 Open in IMG/M
Source Dataset NameSoil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1207
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location
Location NameUSA: Colorado
CoordinatesLat. (o)38.9206Long. (o)-106.9489Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028575Metagenome / Metatranscriptome191Y
F053508Metagenome / Metatranscriptome141Y

Sequences

Protein IDFamilyRBSSequence
Ga0307308_101293161F053508N/ALFVVIDSDLRSSQWQTVNALANKFPDKQKAVDAIKQQLNRKGLDWKRDLEPALGPEVDVVMLDFAHPNETVALMQPQDEGAFERAVKKGNAIDPSSQLVYDKFHGWTVMSDKQAAIDAFERASDSSVRMLPEDGTFSSATRKSGDGILRAYVNGAQVMTAARNFLGPDAGPYFKKLGTLDWLLMTLRAKSDGIAWDTTVHGTPGKELDKV
Ga0307308_101293162F028575N/ASLGGEGVLYLLPGTLLPVVTLEVQPADPASAATSLRALAAKAAKVLPLHVERRGNKVLLTNAPPDFNPGRASLVDDQPFKDALAAADAPAKVTWLAYADIQRLAPILQALASLTGTGQTKPSTMLKLEKFGTLVAFGSNSGSTSSLEARLTIR
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