Scaffold Ga0272443_10011715

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0272443_10011715

Scaffold Ga0272443_10011715

Overview

Basic Information
Taxon OID	3300028883 Open in IMG/M
Scaffold ID	Ga0272443_10011715 Open in IMG/M
Source Dataset Name	Marine sediment archaeal communities from Little Sippewissett salt marsh, Falmouth, MA, United States - SSM-Acet-12
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	7516
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (71.43%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Wetlands → Sediment → Marine Sediment → Marine Sediment Archaeal Communities From Little Sippewissett Salt Marsh, Falmouth, Ma, United States

Source Dataset Sampling Location
Location Name	USA: Falmouth, Massachusetts
Coordinates	Lat. (^o)	41.5758	Long. (^o)	-70.6394	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F033389	Metagenome / Metatranscriptome	177	Y
F051940	Metagenome	143	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272443_100117152	F033389	AGGTGG	MEHRCKTKTSAKRYASRMRGKGFNASVYKKKKGYGVSVTRK
Ga0272443_100117153	F051940	GGA	MRSLYVDDKADARMIGGVIGILITLIIAVLVFYNIAGSIDTSTIDANFDGNNGTFAGYATNASNATQDQAATFFAIAPIIAIVVVAVVILKYVGQI
Ga0272443_100117154	F051940	N/A	MKQLLNDDKADVRMIGGVVGILVTLIIAVLVFYNIAGSIDTDTIDGELTGTPAANATEATLDQAATFFTIAPIIAIVVVAVVILKYVGQI

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