| Basic Information | |
|---|---|
| Taxon OID | 3300028878 Open in IMG/M |
| Scaffold ID | Ga0307278_10000009 Open in IMG/M |
| Source Dataset Name | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 121311 |
| Total Scaffold Genes | 100 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 56 (56.00%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Colorado | |||||||
| Coordinates | Lat. (o) | 38.9206 | Long. (o) | -106.9489 | Alt. (m) | Depth (m) | 20 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002484 | Metagenome / Metatranscriptome | 555 | Y |
| F007043 | Metagenome / Metatranscriptome | 359 | Y |
| F013893 | Metagenome / Metatranscriptome | 267 | Y |
| F022970 | Metagenome / Metatranscriptome | 212 | Y |
| F030208 | Metagenome | 186 | Y |
| F104617 | Metagenome | 100 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0307278_1000000919 | F022970 | GGGGG | MKIQVDPEAREELIEFLRRADCTVQVEDDGSLVVDVPDVVGEDQARLEVDLYLKAWQASHPDVETHLRGIPPSGVEKEAETAD |
| Ga0307278_1000000934 | F013893 | AGGAGG | MHHGHRRFHRRSVGHRWYEPQRVLERLEEYQRDLEQELADVADLIARLKKDQPEAVTV |
| Ga0307278_1000000954 | F030208 | AGGAGG | MEYRIDREALDEFIGRQVELVESASIPKLLADVVELRLRHESVSRDEVRALWLGAGLATHVGLAIFEEPERFVIAVPSPVTPAAALAA |
| Ga0307278_1000000962 | F104617 | GGA | VESDTVNAILEDLTQLSPKRLERRLEQLAREALPCGSAIVFDGSPREGLTVGLRVESEGRRDVLDLARVLEEEPGGQVFSAWALLAPSRGHPSWRLLLRIHFERPVKCSFIVRLDVRDHPSDPLRAALPLILAADRFALAFDGPPEHDRPLVWVYAPAARECVLEVLAAVGIA |
| Ga0307278_100000097 | F007043 | N/A | MTSLRPLRFRRRPVTPTVESLNERLCDLTCERQQLRANGADSVALERNRVAIAGTQWELSYALIERYLPQQVAAAAQSAA |
| Ga0307278_1000000998 | F002484 | GAG | MARVEFLQDAIRLLVAERQALHERDASRDELEANRLELARRQQQFSHALIDRYLRRAERHAA |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |