NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0307312_10142370

Scaffold Ga0307312_10142370


Overview

Basic Information
Taxon OID3300028828 Open in IMG/M
Scaffold IDGa0307312_10142370 Open in IMG/M
Source Dataset NameSoil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1516
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location
Location NameUSA: Colorado
CoordinatesLat. (o)38.9206Long. (o)-106.9489Alt. (m)Depth (m)5
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000805Metagenome / Metatranscriptome883Y
F001079Metagenome / Metatranscriptome785Y
F012223Metagenome / Metatranscriptome282Y
F019580Metagenome / Metatranscriptome229Y

Sequences

Protein IDFamilyRBSSequence
Ga0307312_101423701F012223N/ADTFFIFGGLAFVAFLAAWKAGHFHELDQVGGLPLLVDEEDYYTPEWALDEEEWS
Ga0307312_101423702F000805AGGAGGMGIPLMGMPSGDSPEKAEKFYHYLQGHQETMQRAATWHVRWLDLAWLWGFVIALVLAILLWIWQYRSTRQKRALYPVDSFGGYTTELAGPATFFFIALTVVLTGWAVALIVGHLVWGQKF
Ga0307312_101423703F001079AGAAGMEAGAVVPSALPYVSWASATFAEIPADQWEDVYASMQALKAHVQEYPGCQKLEAFVDLGGSGAVRVHCYTVWDTPEQLEAFLERGYTFERMLKGVANLPAEPTRVMEKVF
Ga0307312_101423705F019580AGGMWVKHLSSLQFLTYVAFFGVIVAAICKFVPGRAAPVRETPYPDEELHAHDAKTAKYFVAGGLFLVLGSVHMAVKNLPWLAEYLARTGYAGHLVRDLSNTHVTIVGGGTLLATGLCWLALPRIVRRPLASEGLAQCAFWFTAIGLAVFYVSLIGNG
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.