NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0265338_10065232

Scaffold Ga0265338_10065232


Overview

Basic Information
Taxon OID3300028800 Open in IMG/M
Scaffold IDGa0265338_10065232 Open in IMG/M
Source Dataset NameRhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3161
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere → Rhizosphere Microbial Communities From Carex Aquatilis Grown In University Of Washington, Seatle, Wa, United States

Source Dataset Sampling Location
Location NameUSA: Seattle, Washington
CoordinatesLat. (o)47.6516Long. (o)-122.3045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000132Metagenome / Metatranscriptome1972Y
F001179Metagenome / Metatranscriptome756Y

Sequences

Protein IDFamilyRBSSequence
Ga0265338_100652324F000132AGGTGGMLIEKLAAGVVQVQTPIGPRYVMPSFLQRLYLLWMFRNFPILPHAVLNGRQQRMIDRMCSEQRFASMAYADGMDEAPVIGTVEHRPLIGADQLPPRRPVTSDARGLAAEVRQRS
Ga0265338_100652326F001179GAGMSHILRNRAVRAARSGNHSLAERTLQQLESLAGGTRDHVIQSSYHGAAGALLMDQKKAQEAIAQLEEDQDNPFTLELLVQAYYQTDQPEKLHEVEAKLRGTNVPTMEQALVVPAARAKRPII

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