NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0265338_10046554

Scaffold Ga0265338_10046554


Overview

Basic Information
Taxon OID3300028800 Open in IMG/M
Scaffold IDGa0265338_10046554 Open in IMG/M
Source Dataset NameRhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3974
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere → Rhizosphere Microbial Communities From Carex Aquatilis Grown In University Of Washington, Seatle, Wa, United States

Source Dataset Sampling Location
Location NameUSA: Seattle, Washington
CoordinatesLat. (o)47.6516Long. (o)-122.3045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003354Metagenome / Metatranscriptome492Y
F006606Metagenome / Metatranscriptome369Y
F009711Metagenome / Metatranscriptome314Y

Sequences

Protein IDFamilyRBSSequence
Ga0265338_100465543F003354GGAMTLKSALQDVKETTLAAVSGLLGKLVYVASLRRTQGRYEHWGMELVHGPESCERALRTAHGEIVTGVLRAPLASLVEDLDESSRANGVAAHAFVEAMRDRFEEMVPGERQDSPAASHLNSVLLALSSLEKNRRRATRSIS
Ga0265338_100465544F006606AGGAGMKRILLVLGAAVLFLNTLMIPTVVKAEGGSTGTNCGQTLCKP
Ga0265338_100465546F009711GGAGMTLAIVLVIAAALSLVLTLGITLSRSLQVSKEAGLAGQIQPIDVEAFRNLIDPAEDEYLRRRLPASEFRLVRRQRLLAMAAYVQVAGRNAAVLILMGQRVLHAGDAQTADAARRLVDNALLLRRNAAFALLRIYIAMAWPTSGLAATPVLHSYEQLNGSAMLLGRLQNPAAPVRIAAML
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