| Basic Information | |
|---|---|
| Taxon OID | 3300028794 Open in IMG/M |
| Scaffold ID | Ga0307515_10012431 Open in IMG/M |
| Source Dataset Name | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 16014 |
| Total Scaffold Genes | 21 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (47.62%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Cantharellales → Cantharellaceae → Cantharellus → Cantharellus anzutake | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Washington | |||||||
| Coordinates | Lat. (o) | 46.6992 | Long. (o) | -120.899 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F024230 | Metagenome / Metatranscriptome | 206 | Y |
| F058588 | Metagenome / Metatranscriptome | 134 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0307515_1001243112 | F024230 | GAG | LIIPVFRFPERNKVPDFSTFSSLLRITAKYELPTVRSQLLEVIHDAFPDTFEGLAPSKSLGEGVFSGPTPHPNAVLNLFVQQKLTSALPMAYYMASRRGLDSLMDRRLPQNAILSPEILQSAIRGFVTLREMELKETHRLIFGSGTPRRCSSLECPSLRVGGPRASEAHQKIIDQVTDSSQPGTKVLQVLSLADIFGGDCYGFCESCVEGWEADHGEVRKKVWNALPGVFGLKG |
| Ga0307515_1001243115 | F058588 | GGA | MDFSTFSSLFSVSANYEMPKIRARLLETIRDAYPEKFEGLEPSKPLGESVFDGPRPHPNSVLNLFVQQKVTLALPMAYYMAARRGLDSLMNTRLPLSATLSGQTLRSAMHGLMELREMELKETHRIIFTIKNASNRVGCSSKDCPSRRFKGPLDAEIIGVHQRAFDRITESADGGTRILQVLSVSEFAEDTGTKFCQVCVEKIQAAHAEVRRKAWAALPRVFGLKA |
| Ga0307515_1001243116 | F024230 | N/A | MFDQTSLSSAESPGGCPHISSSDTAADFATLLKMIYLPGYVALSPCRRNVLLIIHVFRFPERNKVPDFSTFSSLLRITAKYELPTVRSQLLEVIHDAYPETFEGLAPSKSLGEGIFSGPTPHPNAVLNLFIQQNLTSALPMAYYMASRRGLDSLMDRRLPQNAILSPEILQSAIRGFVTLREMELKETHCLIFGSGTPRRCSSLKCPSLRVGGPRASEAHQKIVDQVTDSSQSGTKILQVLSLGDICGDDCCGFCESCVEGWDADHAEVRKKVWNALPGVFGLKG |
| Ga0307515_1001243119 | F058588 | N/A | MPEIRARSLETIRDAYPEKFEGLNPSKTLGEDVFDGPRPHPNSVLNLFVQQKVTFALPMAYYMAARRGLDSLMDTRLPLSATLSGQTLRSAMHGLMTLREMELKETHRIVFTIKDAPNHAGCSSTDCPSRRFEGPLDAEITGAHQRAFNRITDSADGGTRILQVLSASEFAEDTGTKFCQVCVEKIQAAHAEVRRKAWAALPEVFGLKA |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |