NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307299_10109596

Scaffold Ga0307299_10109596


Overview

Basic Information
Taxon OID3300028793 Open in IMG/M
Scaffold IDGa0307299_10109596 Open in IMG/M
Source Dataset NameSoil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1034
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location
Location NameUSA: Colorado
CoordinatesLat. (o)38.9206Long. (o)-106.9489Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026916Metagenome / Metatranscriptome196Y
F038296Metagenome / Metatranscriptome166N

Sequences

Protein IDFamilyRBSSequence
Ga0307299_101095961F026916AGGMSTEDQILSSELHGEALLTARRPELQPLIDHLREVAQGRDDIRVECAGTIAGSWFSSITRRGEDLIAAGLLMLAGPVDLDELDRWMRIGWERRRGADIPYG
Ga0307299_101095962F038296N/ANMSDIRNPDPEPMAAADRMRRHRARQRGNDVPKAKPGPKPRKPQTLREASLEELIDEISDRLTGRMADDPEIRELAFRGIVHSYQTSGDLLSFVSIQPFAKE

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