NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307290_10103160

Scaffold Ga0307290_10103160


Overview

Basic Information
Taxon OID3300028791 Open in IMG/M
Scaffold IDGa0307290_10103160 Open in IMG/M
Source Dataset NameSoil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_144
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1040
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location
Location NameUSA: Colorado
CoordinatesLat. (o)38.9206Long. (o)-106.9489Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042255Metagenome158N
F074185Metagenome / Metatranscriptome120N

Sequences

Protein IDFamilyRBSSequence
Ga0307290_101031601F074185GGTGGMRPSRVSTEVTTPTAPAHEADAERRHEHRFQVSESIARLVMRTTANNLPLSRDDRPYQWSTTTYCDTVSWSIFRAAEKGSAMQLRIREYHRTRPREVLNPGTAWIEFKDDEQDMSLKERFGVPMDVARSFLRGGATLPDPEHGLAERAVRLLKEGARPVAVTQYNRLAYNSLDSS
Ga0307290_101031602F042255N/AATFGAAAWPSLGLTIVTGVAIQLGERIVIPAIHRPASELVYSQVVSTIRPRARAFLSGGVNAFGNFAAAVALLVGLRFADTPVLLAVATGLSGVYVYNAWHTMRLFGQRILENLTSLEPDVRLSAAEILATEHGAVPDHLLRSLDGVIPADVEHGLRVALTRRGVVAVAADATE
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