NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302223_10255610

Scaffold Ga0302223_10255610


Overview

Basic Information
Taxon OID3300028781 Open in IMG/M
Scaffold IDGa0302223_10255610 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E2_3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)579
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3535Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001837Metagenome / Metatranscriptome628Y
F021375Metagenome / Metatranscriptome219Y

Sequences

Protein IDFamilyRBSSequence
Ga0302223_102556101F001837AGGAMSRRRLEGYLDKVFGFSALVSALPEGRQSPQHPWKKVFDAVFLGAAMQIPSLLQIEAECCEGVLVKRIGPISDDTIGYALQRQSPEPVFALSCEIARRLKRNGVLRSDWSRGLVVAAVDGIEICSSFVRC
Ga0302223_102556102F021375N/ANLHSQFQISVLVDGKPKAINIPAELAEKVREKIEMRRRFESAAATICRLNLKRFLKEKEN

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