NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0302301_1000267

Scaffold Ga0302301_1000267


Overview

Basic Information
Taxon OID3300028731 Open in IMG/M
Scaffold IDGa0302301_1000267 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E1_2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)31435
Total Scaffold Genes35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (54.29%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3535Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001485Metagenome / Metatranscriptome686Y
F001893Metagenome / Metatranscriptome621Y
F017614Metagenome / Metatranscriptome239Y

Sequences

Protein IDFamilyRBSSequence
Ga0302301_100026710F001485N/AVRLSGFDSRNYNLFMERKIFWTVFTVLGLLADFLLPIWWGLAATIPCLFIAWWVAYRSDW
Ga0302301_100026712F017614GGAGMYLQPVVRCKNPDCPTPSAARIRLPFANPPATGADAPDWPREGWQLRLICRECDHWYIYDKKDIQWAPYTRPLEEETRVDFLGVELECGEPGCGSRTRWHVLDNSQMSETEAYEFVLRADPVAVCENGHPFSISGTKSSAVGKAESV
Ga0302301_10002673F001893N/AMGIIKACIGFLAIAAVVVGLFQVAPPMLANYSFQDDLKTVSLMDSANLQKTDEDVRNDVLRKAKEHDLPIDGKQITVQRINSPGLSAIYIAVNYSVTINLPGYPFDMSFNPTTGNKGF
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.