NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302301_1000042

Scaffold Ga0302301_1000042


Overview

Basic Information
Taxon OID3300028731 Open in IMG/M
Scaffold IDGa0302301_1000042 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E1_2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)151313
Total Scaffold Genes149 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)111 (74.50%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3535Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000136Metagenome / Metatranscriptome1961Y
F001885Metagenome / Metatranscriptome622Y
F002319Metagenome / Metatranscriptome571Y
F005753Metagenome / Metatranscriptome391Y
F043794Metagenome / Metatranscriptome155Y

Sequences

Protein IDFamilyRBSSequence
Ga0302301_1000042135F001885AGAAGMSQAYLSIAIWEPLPGMEAVSLETIRELNAIVSRKQYGHDTLYRSADAQYVLLRCWTSEQARSAAQEDPEVLRCWARLGNEIKILRVYEKLEEIGV
Ga0302301_100004225F000136AGGAMAKAKLRILYGEGDAEEQAAPAAAFEKAGHTVQPALGRKAVVEALQKGAFDLVVLGPSLTRNDRHHLPYMVKKAQAEAAVLVMHADGSRHPYVDACTDTGASVENVLARIEGMQIAGLMAAAAAGR
Ga0302301_100004229F043794GGAGGMAADQQARLAAELEYFDKHKTEWLAHKTGEYVVIKDGGLLGFYPNFEAAYRAGATQYGLETDFLVKQILEHEPVFFVL
Ga0302301_100004239F005753AGGAVSRTDEMNTREDERSEKEAGKTGRVLLAAFSRPPAAHGEDVNASILIAAESASSYPGLKEAAQYFGPVTEIAKAQGLEVDGEPYEFEIGAKTTVRGDFQKDIGTRVMRQSTLVILARGYAVSFTFIGGTEDEVEELIEGLSFGAETKPHPR
Ga0302301_100004292F002319GGAGMTSQIVNLQVAASIPIDCDFWSEDDGWKGLCKSLPVTVGGSSFEDAKKNMATELQAQIEGILREHPERSAQRIA
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