NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302301_1000035

Scaffold Ga0302301_1000035


Overview

Basic Information
Taxon OID3300028731 Open in IMG/M
Scaffold IDGa0302301_1000035 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E1_2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)165941
Total Scaffold Genes153 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)114 (74.51%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3535Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000414Metagenome / Metatranscriptome1169Y
F000687Metagenome / Metatranscriptome937Y
F006072Metagenome / Metatranscriptome382Y

Sequences

Protein IDFamilyRBSSequence
Ga0302301_1000035128F006072AGGAGGVSKIAAVVLAFLSFILLATPSRAQLLPSGNVYVGAAYGDSVDVINRYTFRGWNASFEDFPFSRYPHLGVVIDGSGFYRVGIQQYNLMIGPRLSFNYGKWRPFVHVLGGEQRMTSDGFTHYVIAEDAGGGVDRKFQFLFMKHFAWRVQFDYMHTHLLSATQNDIRGSVGLVWRF
Ga0302301_100003553F000687GGAGGMESQPIAIRAVPGVGNGHVQEVVRQAHEELRQLLQQRAEVMRRIGTIKQTIAGLANLFGDQLLSEELLEMIDRKSGGRQPGFTKACRMILMEASRALSAREVCDRIQEKMPLMLERHKDPMASVTTVLNRLVAYGEAKAVALENGRRAWQWVADTASGEAPGLAILAPQ
Ga0302301_100003559F000414AGGAGMSAPSRRPEIRRRRARQHKITTLRKRLASAQTDADRTRVTAKLHKLSIASPGQPLLK
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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