NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307319_10026946

Scaffold Ga0307319_10026946


Overview

Basic Information
Taxon OID3300028722 Open in IMG/M
Scaffold IDGa0307319_10026946 Open in IMG/M
Source Dataset NameSoil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_368
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1772
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location
Location NameUSA: Colorado
CoordinatesLat. (o)38.9206Long. (o)-106.9489Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019797Metagenome227Y
F083867Metagenome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0307319_100269461F083867GGAGGVNRPDSRNAAGGWQATPGQPIPRAARQPAANGLLLVMLLLVWFSPLSIVAWLLGQVAILLQRRWHWWRFALASLASIGVVLAVTGPEQALRRHVFVPQHFWQYVALHFGFGPPGTRITISQFLWDLAASQIWLAVPVGLLAASLSVWNAERAAGGAEWSPFVRRRQRIDQRTRDRKTARLVARPRDHKLTTPALGIALDGDLRSWRQGRYVVPPAQLRGKAMAVVGAPGAGKTITLLRLAYLAGLLGRKVCFVDCKGTDPTLVPALIAAYQLGNPAARIGCWPDTAMDMWRGSPVHV
Ga0307319_100269462F019797GGAGGMPEEGFYRAGRTHPGPQVHGPRTGPPSGGTGGGSSRRPRWDTDAGITDRDVAALRWLGQQYAARSDVLRVLLGRLSPGSPRVAGQLGDATLRDVLDRWEDRGLVARDCLLGHLWVAPTVKALRLVGLDVRAWSFVIPQLAHVHAVGVVRLALEPSIPAGGRWLSERELRREAGKSHVPDAAIQLPDAPDLEAGAGLYGEDVDALPKRIAVEVELTRKGAARLREAWTRPRHGRWQRTAYYAPPEVAGYLTGQLARIRPRHPIQVHPLPDVPGTSYLRLGGAS
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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