NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302165_10101264

Scaffold Ga0302165_10101264


Overview

Basic Information
Taxon OID3300028678 Open in IMG/M
Scaffold IDGa0302165_10101264 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_E3_2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)768
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0469Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001878Metagenome / Metatranscriptome623Y
F071546Metagenome / Metatranscriptome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0302165_101012641F001878AGGAGMSAPSRRPEIRRRRTRAEKVLKLRKRLVAASASSDKDRLTAKLHRLEFNSPGNPLVQKA
Ga0302165_101012642F071546GGAMGKNPDYSMAFKRNLVLSLLLGIGGGLAAYALAWGLFTTHPELGMEVDSARSIAAWTAPLFFVGSLIYFAVRER

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