| Basic Information | |
|---|---|
| Taxon OID | 3300028672 Open in IMG/M |
| Scaffold ID | Ga0257128_1016338 Open in IMG/M |
| Source Dataset Name | Metatranscriptome of marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2011_P26_10m (Metagenome Metatranscriptome) |
| Source Dataset Category | Metatranscriptome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1563 |
| Total Scaffold Genes | 6 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (50.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Canada: Northeast Subartic Pacific Ocean | |||||||
| Coordinates | Lat. (o) | 50.0 | Long. (o) | -145.0 | Alt. (m) | Depth (m) | 10 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F012721 | Metagenome / Metatranscriptome | 278 | Y |
| F024583 | Metagenome / Metatranscriptome | 205 | Y |
| F031924 | Metagenome / Metatranscriptome | 181 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0257128_10163382 | F024583 | N/A | MKNIIIALLVLCFTATVGNTNENNIINKVTTHISNEIQDIKEFQKDNWEKGKIQTANNIAMIKSWFVKN |
| Ga0257128_10163383 | F031924 | AGGA | MDDRGPNDLERIIEDKNKIITHLKHDNKTLAKEVSDLIEEKKRLLDNQSKK |
| Ga0257128_10163386 | F012721 | N/A | FETFLILDDILKFSKRLNKDIGEKVLWPKLCDRMIRYRPFVSYNITKYKMTLKKKIKDM |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |