| Basic Information | |
|---|---|
| Taxon OID | 3300028622 Open in IMG/M |
| Scaffold ID | Ga0302253_1000139 Open in IMG/M |
| Source Dataset Name | Enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAG_RA_Trp |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 76686 |
| Total Scaffold Genes | 96 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 83 (86.46%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Activated Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 44.11 | Long. (o) | -88.23 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F069433 | Metagenome / Metatranscriptome | 124 | N |
| F072819 | Metagenome | 121 | N |
| F076867 | Metagenome | 117 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0302253_100013930 | F072819 | GAG | MFQDQIKAQEVSFKIARIEGENAVSELVNWCRNNLDELTVQCFTHKRFMDVQALVDALCEVYRDLGVEGDKGNVSTFVLFLAGKHRDKIYASHVVELNDTHRQILRDKLGLDIEEIEPGLSKLDWRTDAGI |
| Ga0302253_100013931 | F069433 | AGGAG | MAHKMPPKQCSSNTPAWTDPVLTDLSTKVRKVHIDELRSFLNTEFVRRGLTQASFTDPTITALVTEIRKVHVDQLRTELAACKSGRGESGYCPQDSSGCMDFTDPTITALSTEVRGIHFRQMMQKVQALMTGCICETEQCQYCADCGYHYTTCSHAGVACDDHKYSECQYSINHYWNCASINLPSSAEHPYKSANPPVAWDGYVPWDWCVYTPPGSNWGTCEYQGGHNHSAWNCKCNPYS |
| Ga0302253_100013953 | F076867 | GGA | MDEKNRNLVEIAKKKRYIALVEKLGRGSLSSKELKELEEFEKSEQRPAGVIDGTVDLPTLCVYLEKSPRMIRRYVQQGMPVFRDAVGEIARFKVGDVFKWFYKKQGSEEDNGKDYWDKEYRKNRAKLSEIELKQKEGEVIPFEDHVSIVKNQIRGIKAGFLRLPKHIAPKLYQQDPKVICEMLDQEIRYIIEQFAGKQNANKAGKGNP |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |