NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0265294_10061695

Scaffold Ga0265294_10061695


Overview

Basic Information
Taxon OID3300028602 Open in IMG/M
Scaffold IDGa0265294_10061695 Open in IMG/M
Source Dataset NameGroundwater microbial communities from a municipal landfill in Southern Ontario, Canada - Pumphouse #3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3239
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Leachate And Groundwater Microbial Communities From A Municipal Landfill And Adjacent Aquifer In Southern Ontario, Canada

Source Dataset Sampling Location
Location NameCanada: Waterloo, Ontario
CoordinatesLat. (o)43.442Long. (o)-80.577Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009968Metagenome / Metatranscriptome310Y
F011593Metagenome / Metatranscriptome289Y
F078878Metagenome / Metatranscriptome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0265294_100616951F078878AGGAGGVSSIVLKIPTESQSFRAALTDATIRDRVLEWTTAAVTLDDAVYIPLRTDWMPNGTRRTADGAEVLIGGRWPPEIDAESGPRVSAAIFGRVWDTLCNATPADELEDIATCGLSGVNEEQMENEVLEEAPVVIHTRATPVNHVDGWPWSHVVTEIRQWADIYPDPLPDPNDISEV
Ga0265294_100616952F011593GGCGGVTDNGLAAPEWCLGCPDPIYDDRRGKGRQWYCRQHSPTGIRCSNVAVLRERCYRVRDYFARKEAMQ
Ga0265294_100616959F009968N/ASHYREQHWWVFMIDFCGLDGDVVGFECPIGCIDTEGCRAYERRPAWPEGAIA
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