NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247822_10635256

Scaffold Ga0247822_10635256


Overview

Basic Information
Taxon OID3300028592 Open in IMG/M
Scaffold IDGa0247822_10635256 Open in IMG/M
Source Dataset NameSoil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Cellulose_Day30
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)858
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil → Soil Microbial Communities From Agricultural Site In Penn Yan, New York, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.673Long. (o)-77.032Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F087406Metagenome / Metatranscriptome110Y
F094552Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0247822_106352561F094552GGAGMPTNQNPDQERDRNRHTQNPPPTDPNQPNRERPMDDPGRGQGDKFEKKLPGNEKDQDPRFRSSREA
Ga0247822_106352562F087406GAGGMKTPQADGSSAPLNATEKPPAPPKKRRGEKLDRGDAHIGATEDQVSDTQAPASEAYKDEPKQG

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