NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247818_10205463

Scaffold Ga0247818_10205463


Overview

Basic Information
Taxon OID3300028589 Open in IMG/M
Scaffold IDGa0247818_10205463 Open in IMG/M
Source Dataset NameSoil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1294
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil → Soil Microbial Communities From Agricultural Site In Penn Yan, New York, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.673Long. (o)-77.032Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005802Metagenome390Y
F006363Metagenome / Metatranscriptome375Y
F020437Metagenome / Metatranscriptome224Y

Sequences

Protein IDFamilyRBSSequence
Ga0247818_102054631F020437AGGAGGMTEPHKLTDLVPVDVLTAVTTAIAVLEIQGPAITEALRQLDRATTMAWKAVNMLGVTDDEWELVKRDLGIARAWDAAYQLVSTFDLPSMQPSADVTADGP
Ga0247818_102054632F005802AGGAGMATDDMSARRRVLLLDVTQTAAEMSRLVHEARDRNLPVEPGVRDGRNALVRWAVFLEEVL
Ga0247818_102054633F006363N/AMDLPSNPPVSPAVRITVLLRLASEGFQDAFGARPEWLEAPPVDLAELREVVGVERIGQLREATGLREGEGYAAGGPPGVVRLAAAAHEGVLGLLGVAALPPDVLIEQTDEGPRYHVPDDWFLTTPAGEPRNN
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