NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0265334_10018642

Scaffold Ga0265334_10018642


Overview

Basic Information
Taxon OID3300028573 Open in IMG/M
Scaffold IDGa0265334_10018642 Open in IMG/M
Source Dataset NameRhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2861
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere → Rhizosphere Microbial Communities From Carex Aquatilis Grown In University Of Washington, Seatle, Wa, United States

Source Dataset Sampling Location
Location NameUSA: Seattle, Washington
CoordinatesLat. (o)47.6516Long. (o)-122.3045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036462Metagenome / Metatranscriptome170Y
F042607Metagenome158Y

Sequences

Protein IDFamilyRBSSequence
Ga0265334_100186422F042607GGAGMALRVVNNKRIDMTDDEWGMYHNIVKSYTTTTNKGEDLFIDLFETDGAGIIIALKPPTKQRTTLEVFLFLMALMQHQHLRLMQNQIDDMCNQVKKKIADIK
Ga0265334_100186423F036462AGGAMTQQVSLGDLVGTDLEEDFLQFDLTDIQQVLENLREIEAIDLSHAEQLQQQALRGADILTGYLGKIVKTVGYLEAKVNSTKNKVSLEYNAVEGRTTMEMRKWAGESAPAVEEVQIKLAKAKASKLVLERKYEILVKSHHHFKDIAQGLRKSILGYSSNTPTTEPVAHGYE
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