NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255345_1060411

Scaffold Ga0255345_1060411


Overview

Basic Information
Taxon OID3300028568 Open in IMG/M
Scaffold IDGa0255345_1060411 Open in IMG/M
Source Dataset NameWastewater microbial communities from Lulu Island WWTP, Vancouver, Canada - plant20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyRestricted
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).


Scaffold Components
Scaffold Length (bps)2044
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Built Environment → Water Treatment Plant → Unclassified → Unclassified → Wastewater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location
Location NameCanada: Vancouver, British Columbia
CoordinatesLat. (o)49.1150727Long. (o)-123.147Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049656Metagenome / Metatranscriptome146Y
F067768Metagenome / Metatranscriptome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0255345_10604113F049656GAGGMTDSIDRYEILTEPDGRGYVTVKRLADGKTATCKAAWLKPAPHSESPTHVMPRSRTKALRMTMLDWE
Ga0255345_10604115F067768GAGGMTDILNNEAVQTALIALIVVALNALAQWVRSKVSYTKIVDDYWCYIQPVAGVVRTEVLDALKSSTLSTSVLGAIVQRGIVQFVESFRLNEGREPTATQIAAVGIELEDVAERAIGGK

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