| Basic Information | |
|---|---|
| Taxon OID | 3300028536 Open in IMG/M |
| Scaffold ID | Ga0137415_10100707 Open in IMG/M |
| Source Dataset Name | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2742 |
| Total Scaffold Genes | 7 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (71.43%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: California | |||||||
| Coordinates | Lat. (o) | 39.7291 | Long. (o) | -123.6419 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000646 | Metagenome / Metatranscriptome | 962 | Y |
| F008095 | Metagenome / Metatranscriptome | 339 | Y |
| F011883 | Metagenome / Metatranscriptome | 286 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0137415_101007073 | F000646 | AGGAG | MKIKWVLCVVLAGCTFGLAKEKADVRDVTGCLSKGDDAKEFLLTGNDGSTWEVRSSKVALSKHVGHTVTATGVVSNATMHNMKEDAKEAAKDSGMKKTDNEHGHLKVTAVQMVSDSCK |
| Ga0137415_101007075 | F011883 | AGG | MMDANHISERLSSLKNEMSELRVTNALYCNRKGYTALEKSASGLRHRRLVEIKLELADLMKRCA |
| Ga0137415_101007076 | F008095 | GGAG | MEKSKDQDRCKGAMEEDKQSQGGNTSMQGQLGHRDEDVELKNADSNLAG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |