NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0256383_120414

Scaffold Ga0256383_120414


Overview

Basic Information
Taxon OID3300028448 Open in IMG/M
Scaffold IDGa0256383_120414 Open in IMG/M
Source Dataset NameSeawater viral communities from deep brine pools at the bottom of the Mediterranean Sea - LS1 300m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)534
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)34.0321Long. (o)27.821Alt. (m)Depth (m)300
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020877Metagenome221N
F064198Metagenome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0256383_1204141F020877AGGAMSKAVNILEVLEKAQQSPASVSKRNKQAVIDAYGRALTMQKVLADFIKV
Ga0256383_1204142F064198AGGMLHYLLATLVVYIVFLALLPQQVAAVTLLVAAWLTSLIGKIDWTTIPYQP

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