NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0304730_1005594

Scaffold Ga0304730_1005594


Overview

Basic Information
Taxon OID3300028394 Open in IMG/M
Scaffold IDGa0304730_1005594 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130628_MF_MetaG (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7991
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (37.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013186Metagenome / Metatranscriptome273N
F037224Metagenome168Y

Sequences

Protein IDFamilyRBSSequence
Ga0304730_10055944F037224AGGAGMIHTMHSDILHKIQVVQAYIHHKTGKNVRIVFNRPDRMQLHLQLLDQAYAVAMAEFKNK
Ga0304730_10055948F013186N/ANAFVHLLGGEYGPRTLKRGMKRALDKYISSNYAEVRAYTSYFLSKMGSYIDADTVINNSYLHVVNIDGDPDKVKGYLLNTIKYQVLWSTSKSHRDDKITAIEHPNTEPVDDDDLVHKLREDRAYSFNKGLIEIYRNEITDKIQLIVFEAYIDKGYITSRAMAIYFGITHTSAYYLIKELKQNINKLQYRYETEPSY

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