| Basic Information | |
|---|---|
| Taxon OID | 3300028394 Open in IMG/M |
| Scaffold ID | Ga0304730_1000360 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130628_MF_MetaG (v2) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 40115 |
| Total Scaffold Genes | 60 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 50 (83.33%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (71.43%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Montjoie, Canada | |||||||
| Coordinates | Lat. (o) | 45.4091 | Long. (o) | -72.0994 | Alt. (m) | Depth (m) | 4 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000166 | Metagenome / Metatranscriptome | 1810 | Y |
| F001059 | Metagenome / Metatranscriptome | 790 | Y |
| F001097 | Metagenome / Metatranscriptome | 780 | Y |
| F004695 | Metagenome | 427 | Y |
| F006264 | Metagenome / Metatranscriptome | 377 | Y |
| F027490 | Metagenome / Metatranscriptome | 194 | Y |
| F098944 | Metagenome | 103 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0304730_100036011 | F000166 | N/A | MPNIPTPHDAAYFAQSVKKWQQVLSLGDWRIEKGTKPAKQAMASVEFTPTARLAVYRLGDFGAEKITPESIDKTALHEVLHIFLHDLMTVAQDPKSSEEDIEMQEHRVINLLENLLYRNSNGIA |
| Ga0304730_100036025 | F001097 | AGGA | MNFEWPIDDSKRIRTLQELRSPRVDKAVQAEEIDDWLEQSVALVAGSVKGLGTNQRRVRYFGFEGPHEQDTK |
| Ga0304730_100036037 | F098944 | AGG | MFDEIRPEGSTVSSAELKRKAREYAKAKRAEKKAMKLATGQIEPKEAPEPEPVKDEYDFTNFTPRSQKQPGRPKSIVNKVTEYGALFNKLNDERTSRGLPPLKTAMEVLIDAMQSDELDIKDKAKIADKLAPFESSRAPIISVEHIQNVTREDEGDAEDALNEFMESLRKV |
| Ga0304730_100036040 | F027490 | GAG | MSYGTVINGGAQMRKGVTKGINDKLVGHAAENGRRDQIAKAVNNAYTVNTVSSQHTNNVKNSGKFTKPSNTSKNYAL |
| Ga0304730_100036041 | F001059 | AGGA | MATYDIDSLKADLPTAKELAQFVYDKVNVSLDLLGKNKEEQYTVAKNALEGKKIPSEYLTDENPYVDKKDQIPCDPVRKLPKRDIDLPDEDSLVHFFGATNMPHPLDPQSDKKVHINFKKYNNGVLTYQIMGPLEQIPVGTKVNKYGQTTPEKYTWLDPRTPELVMRRADGTLTEKGRGLYTFLVGEKGGGVWSLIDRDIVSISAKNIADPWA |
| Ga0304730_100036042 | F006264 | N/A | MEDPSKIFQSKLSSQAEVCARKALEWLQKDLQGPQKLQPDEVYYLSYAAQVLLNIRDNYGKK |
| Ga0304730_100036044 | F004695 | AGGA | MLDKQNVIVENLASSSGNRGLTEQVCHEVYVKMVDYLRLTQSKNTYNRFTDYHYLNIPVSNSTEPIRGIDYIQPIVAPGIDYATAVITKCLMPNGKINFEFERFSEADGDQARQATEMVKYMLNSKNDSYQVIRDWAQDSLLHKNGIVMVSPVRSPITQYKEVEGTRDQLRVFETLAGDKGLTAKRQNMRKIDVDLQGAMQEAMAPDEAMQEPTGDELQDALRNNTIYRAKYKLTGYETSIRVKHVAQHYFVCNPTINTIQDQDFVGFYDPMTIHECKSQFPFVDLELLADHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVIASQGADRYSRVIMLTTAWLRRDIDNDGEEEIVECCFSGSYILYAKEVDFIPLANMCPKPITGNFFGYSLGERLVPLQEYATAIRRAEMSFAMQSSTPRIGVNPEFLDAEEIQRGVSAMFILDRKFDPTKHIFEFQPMQGNLAYVESAMNRFESDKMAMIGMTSPSDTLNPEVMKDGNSGFKLQLAMGPNQLIQDEMVKNCAIGLRDVIYITWKTLIQYSDDFNIQQLAATCLKGQEFLDAKSIENFEFIDRKMINIDLALGFLSEENRLTRQQMILQAQQQFAQAMMQIPPEVPEMFIKIRRPFEDTLRVLGVKDVDAYLPTMDEAVKIMQAQMAKGPSAEQQEMQSKVALNNAKTQESGSVTALNMKKAEDIDMDNFYEGLAAKRGKLSAVQI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |