NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0306899_1077758

Scaffold Ga0306899_1077758


Overview

Basic Information
Taxon OID3300028368 Open in IMG/M
Scaffold IDGa0306899_1077758 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Rauer Islands, Antarctica - Metagenome Filla 3 #764 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)566
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Rauer Islands
CoordinatesLat. (o)-68.5558Long. (o)78.1913Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037512Metagenome167Y
F050795Metagenome145N

Sequences

Protein IDFamilyRBSSequence
Ga0306899_10777581F037512N/ASTDPDSACQFVIYPRAATEREAVDQANQQYGPHFEADRAAVTGIMN
Ga0306899_10777583F050795AGGTGGMNKLEIPERFTGTVYVCMYSDPNSCLYGETFLSEFDPKGSSDSITLGKEDVDIALDHTGSLDKQVDQLRAARQKIIAKASGEARQIEEAIDSLLA

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