NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0306899_1010042

Scaffold Ga0306899_1010042


Overview

Basic Information
Taxon OID3300028368 Open in IMG/M
Scaffold IDGa0306899_1010042 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Rauer Islands, Antarctica - Metagenome Filla 3 #764 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2194
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Rauer Islands
CoordinatesLat. (o)-68.5558Long. (o)78.1913Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030942Metagenome184N
F076657Metagenome118N

Sequences

Protein IDFamilyRBSSequence
Ga0306899_10100422F076657AGGTGGMEFNFYQNSKVEVTSKVFPAARADKHTSTKANEEFTFNNIAVPQGSKISVYPAADNTGSLYFIDPETGTKAPLKSGKAFAWTNFQNGTFELSDDSDTAYALAEVEQ
Ga0306899_10100424F030942AGGTGGMSHAVLKDENDRIVQIQKNGEIVWDDEEYIQRPKIGEPTAQMLRDAETIQDIKEYLARVHKIDLRTGSE

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