NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0306898_1010810

Scaffold Ga0306898_1010810


Overview

Basic Information
Taxon OID3300028364 Open in IMG/M
Scaffold IDGa0306898_1010810 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Rauer Islands, Antarctica - Metagenome Filla 1 #564 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1595
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Rauer Islands
CoordinatesLat. (o)-68.5558Long. (o)78.1913Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004915Metagenome418N
F005137Metagenome411N

Sequences

Protein IDFamilyRBSSequence
Ga0306898_10108101F005137N/ANGLPANLEFQGKQGGTGQVTFSAESGGTLNVPSVFLAETAEQHCFFGIRTDGSDVSTILGTLKLA
Ga0306898_10108103F004915N/AMKLTTITNITHEQWKDQAERFSSIADAVNSLTFPKKDVNEMPATIEMTVVQPLSQGFKGRVIYTQQFEKIIETQSEIFDAEGNPTGEFETIETAIIKKHVVVDYYETIPRDMANVMFGQLLGSVPDTIIDYLDIQDWCIEQAFIQQVVMRNTFGGLLASDYTLTK

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