NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0306877_1007514

Scaffold Ga0306877_1007514


Overview

Basic Information
Taxon OID3300028363 Open in IMG/M
Scaffold IDGa0306877_1007514 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Deep lake, Antarctica - Metagenome #2 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1821
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Deep lake
CoordinatesLat. (o)-68.5558Long. (o)78.1913Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007787Metagenome345N
F037467Metagenome168Y
F060412Metagenome133N

Sequences

Protein IDFamilyRBSSequence
Ga0306877_10075141F037467N/AMNFIEQLQEALLLGLKTNVDAESINLENKLKADPSNITLKELRLIFQAAGIKSITIENTTIKI
Ga0306877_10075143F060412N/AMKIIREEINVELIFETYKVKTNSPNLTYSKFCIYKLGTSVTIVNGWKNSTINMSPHKKDKVFELTGLKPEDYVKIVTLYV
Ga0306877_10075145F007787N/AMGKTKELAMRLTAENFEELSFAQDFSKKEAKKKGTDLANEILNNGNSNPLEVMATLVRLSEVINTFQTELKANLDLSEELKLNGVNFKSRQGYAVYDYSQDGMIDHYEKVLKQRKDLIKSACKAGEPVTDPNTGEEINPVPVKNYTKDSIVITF
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