NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0306877_1002753

Scaffold Ga0306877_1002753


Overview

Basic Information
Taxon OID3300028363 Open in IMG/M
Scaffold IDGa0306877_1002753 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Deep lake, Antarctica - Metagenome #2 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4139
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Deep lake
CoordinatesLat. (o)-68.5558Long. (o)78.1913Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003482Metagenome / Metatranscriptome484Y
F008895Metagenome / Metatranscriptome326Y
F026120Metagenome / Metatranscriptome199Y

Sequences

Protein IDFamilyRBSSequence
Ga0306877_10027531F008895N/ACVNFTGTRFIFLKFKNISVNNLNSKGLTDDAIVRIDNNVPFGYMIFYRPMEAHRFLVGKQTITSIQFTLTDTQGNDLNIFSNDAQITLKIEYIYKAEMRSMEEGTLNYELRKLAEVTKENADLTGVYNPETNEFIRE
Ga0306877_10027535F003482N/AMDETAENKELLNIKQQEEFKKNIHNTYNLIKRDTEYIPATEELNDANKGLWIEHDDSDFAKVFNGLLDYTNDDEEFDNLDWNSVNYEVYGSDYYQERFPGFADEVYEILAKSTEPESKIVDHRVPPLKITDGEFIVKFD
Ga0306877_10027537F026120AGGMALEIKETPNKRLKIMNTPNNLDQHLAPDIPYPLPPCSGFNFIISGASGSGKTTLLTSIMSAKKVNGIRQSYRKCFDKILICSPTLGSGKSAKKDVFADVPSEQKFKAFNNTTMNEIFEMIESNREEEE
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